Variant report

Variant	rs1916876
Chromosome Location	chr7:121585029-121585030
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1011693	0.81[EUR][1000 genomes]
rs1024713	0.83[EUR][1000 genomes]
rs1196477	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1196478	0.92[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196480	0.89[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1196481	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1196483	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1196484	0.89[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1196486	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1196487	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1196488	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1196490	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1196491	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1196493	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1196494	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1196495	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1196496	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1196510	0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1196511	1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1206494	0.81[EUR][1000 genomes]
rs1206500	0.82[EUR][1000 genomes]
rs1206501	0.82[EUR][1000 genomes]
rs1206502	0.83[EUR][1000 genomes]
rs1206504	0.83[EUR][1000 genomes]
rs1206505	0.83[EUR][1000 genomes]
rs1206507	0.83[EUR][1000 genomes]
rs1206509	0.83[EUR][1000 genomes]
rs1206514	0.84[EUR][1000 genomes]
rs1206516	0.84[EUR][1000 genomes]
rs1206517	0.84[EUR][1000 genomes]
rs1211621	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1526314	0.84[EUR][1000 genomes]
rs1721857	0.92[CEU][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1721858	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1721859	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2024252	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2690271	0.87[ASW][hapmap];0.92[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2690272	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4731044	0.89[CEU][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6961716	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6967270	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs727766	0.81[CEU][hapmap];0.81[CHB][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7794741	0.81[ASW][hapmap];0.89[CEU][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7810556	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1916876	TAS2R16	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121571600-121597400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:121571800-121601200	Weak transcription	Esophagus	oesophagus
3	chr7:121580200-121585600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:121582200-121590200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:121582200-121591600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:121582200-121595000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:121582400-121591800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:121582600-121617600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:121582800-121585600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:121582800-121585600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr7:121582800-121590200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:121583000-121585600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:121583000-121585600	Weak transcription	Fetal Brain Female	brain
14	chr7:121583000-121588200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:121583000-121592400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:121583000-121592600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:121583800-121585400	Enhancers	NHEK	skin
18	chr7:121583800-121585800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:121584000-121585800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:121584800-121586400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:121584800-121586400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
22	chr7:121585000-121585400	Enhancers	Fetal Brain Male	brain
23	chr7:121585000-121586000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr7:121585000-121586400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr7:121585000-121586400	Enhancers	HMEC	breast
26	chr7:121585000-121587400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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