Variant report

Variant	rs1211621
Chromosome Location	chr7:121614844-121614845
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1011693	0.81[EUR][1000 genomes]
rs1024713	0.83[EUR][1000 genomes]
rs11767822	0.83[CEU][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs1196478	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1196480	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196481	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196483	0.91[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196484	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196486	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1196487	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196488	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1196490	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196491	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1196493	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1196494	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1196495	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1196496	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1196511	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1206486	0.83[EUR][1000 genomes]
rs1206487	0.83[EUR][1000 genomes]
rs1206488	0.83[EUR][1000 genomes]
rs1206490	0.83[EUR][1000 genomes]
rs1206492	0.83[EUR][1000 genomes]
rs1206494	0.81[EUR][1000 genomes]
rs1206500	0.82[EUR][1000 genomes]
rs1206501	0.82[EUR][1000 genomes]
rs1206502	0.83[EUR][1000 genomes]
rs1206504	0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs1206505	0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs1206507	0.95[JPT][hapmap];0.84[EUR][1000 genomes]
rs1206509	0.84[EUR][1000 genomes]
rs1206514	0.85[EUR][1000 genomes]
rs1206516	0.95[JPT][hapmap];0.85[EUR][1000 genomes]
rs1206517	0.95[JPT][hapmap];0.85[EUR][1000 genomes]
rs12671846	0.91[EUR][1000 genomes]
rs1526314	0.95[JPT][hapmap];0.85[EUR][1000 genomes]
rs1721857	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1721858	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1721859	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1916875	0.80[CEU][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes]
rs1916876	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2024252	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2690271	0.87[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2690272	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4629793	0.81[CEU][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs4731044	0.91[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6961716	0.92[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6967270	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7794741	0.91[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121582600-121617600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:121596000-121618400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:121601600-121628000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:121601800-121625600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:121602400-121618200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:121603400-121631400	Weak transcription	NHEK	skin
7	chr7:121604000-121616600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:121605800-121627600	Weak transcription	Brain Germinal Matrix	brain
9	chr7:121607400-121619400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:121607800-121617400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:121607800-121625400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:121611200-121618400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:121611400-121618000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:121611600-121621600	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr7:121612600-121629200	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:121613200-121635000	Weak transcription	Fetal Brain Male	brain
17	chr7:121613600-121619800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:121613600-121620000	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr7:121613800-121615600	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr7:121613800-121624000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:121614400-121633200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr7:121614600-121615000	Strong transcription	Fetal Brain Female	brain
23	chr7:121614600-121620400	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr7:121614600-121629000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr7:121614800-121615600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:121614800-121616000	Strong transcription	H9 Cell Line	embryonic stem cell
27	chr7:121614800-121620000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links