Variant report

Variant	rs11767822
Chromosome Location	chr7:121606698-121606699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1011693	0.92[CEU][hapmap];0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1024713	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1196478	0.84[EUR][1000 genomes]
rs1196480	0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1196481	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196483	0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196484	0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196486	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1196487	0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196490	0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196511	0.90[EUR][1000 genomes]
rs1206367	0.84[ASW][hapmap]
rs1206368	0.84[ASW][hapmap]
rs1206369	0.84[ASW][hapmap]
rs1206486	0.88[CEU][hapmap];0.83[CHB][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1206487	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1206488	0.88[CEU][hapmap];0.88[CHB][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1206490	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1206492	0.88[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1206494	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1206500	0.83[CHB][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1206501	1.00[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1206502	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1206504	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1206505	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1206507	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1206509	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1206514	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1206516	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1206517	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1211621	0.83[CEU][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs12154537	0.82[ASN][1000 genomes]
rs12671846	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13229261	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs13241278	0.82[ASN][1000 genomes]
rs1526314	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1721857	0.84[EUR][1000 genomes]
rs1721858	0.84[EUR][1000 genomes]
rs1721859	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1725066	0.84[ASW][hapmap]
rs1860507	0.84[ASW][hapmap]
rs1916875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024252	0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2690271	0.84[EUR][1000 genomes]
rs2690272	0.84[EUR][1000 genomes]
rs279668	0.84[ASW][hapmap]
rs279674	0.84[ASW][hapmap]
rs279699	0.84[ASW][hapmap]
rs28530500	0.83[EUR][1000 genomes]
rs35258872	0.81[ASN][1000 genomes]
rs35662069	0.81[ASN][1000 genomes]
rs4629793	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731044	0.92[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6961716	0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6964319	0.83[CHB][hapmap]
rs6967270	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs727766	0.81[EUR][1000 genomes]
rs7794741	0.92[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11767822	TAS2R16	cis	parietal	SCAN
rs11767822	KCND2	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121582600-121617600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:121592000-121609600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:121596000-121618400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:121601600-121628000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:121601800-121607200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:121601800-121625600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:121602000-121614600	Weak transcription	Fetal Brain Female	brain
8	chr7:121602400-121618200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:121603400-121631400	Weak transcription	NHEK	skin
10	chr7:121603600-121614800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:121604000-121616600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:121604600-121607800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr7:121604800-121606800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:121604800-121607800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr7:121605400-121607600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:121605600-121607800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr7:121605800-121607000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:121605800-121607800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr7:121605800-121627600	Weak transcription	Brain Germinal Matrix	brain
20	chr7:121606200-121607200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:121606200-121607400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr7:121606200-121612000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:121606400-121609000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:121606600-121607800	Enhancers	HUES48 Cell Line	embryonic stem cell

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