Variant report

Variant	rs13229261
Chromosome Location	chr7:121630503-121630504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1147493	0.80[CEU][hapmap]
rs1147502	0.85[CEU][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap]
rs1147504	0.85[CEU][hapmap];0.86[GIH][hapmap];0.81[JPT][hapmap]
rs11767822	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs1206365	0.88[CEU][hapmap]
rs1206504	0.83[CHB][hapmap]
rs1206505	0.82[CHB][hapmap]
rs1206507	0.83[CHB][hapmap]
rs1206516	0.83[CHB][hapmap]
rs1206517	0.83[CHB][hapmap]
rs12154537	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12671846	0.81[ASN][1000 genomes]
rs13241278	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1526314	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs1916875	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs35258872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35662069	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4236613	0.80[EUR][1000 genomes]
rs4629793	0.81[ASN][1000 genomes]
rs6964319	0.90[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs13229261	RARRES3	trans	parietal	SCAN
rs13229261	KCND2	cis	cerebellum	SCAN
rs13229261	TAS2R16	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121603400-121631400	Weak transcription	NHEK	skin
2	chr7:121613200-121635000	Weak transcription	Fetal Brain Male	brain
3	chr7:121614400-121633200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:121618600-121632800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:121618800-121633800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:121619800-121633600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:121624000-121647800	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr7:121625000-121635200	Weak transcription	Brain Substantia Nigra	brain
9	chr7:121625000-121650800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:121626000-121631800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:121626000-121650600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:121626000-121651000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:121626400-121650400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:121627800-121633400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:121627800-121636600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:121627800-121650600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:121628200-121631800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:121628200-121650000	Weak transcription	Brain Germinal Matrix	brain
19	chr7:121628600-121631800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr7:121628800-121631800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:121629000-121631200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:121629000-121635600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:121629000-121636800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr7:121629000-121650000	Weak transcription	Fetal Brain Female	brain
25	chr7:121629200-121630800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:121629200-121631400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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