Variant report

Variant	rs1147504
Chromosome Location	chr7:121653398-121653399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121653397..121655198-chr7:122171537..122173372,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1147492	1.00[YRI][hapmap]
rs1147493	0.92[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs1147494	0.92[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1147495	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147502	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1206352	0.81[CHB][hapmap];1.00[YRI][hapmap]
rs1206353	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs1206359	1.00[YRI][hapmap]
rs1206360	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs1206364	1.00[YRI][hapmap]
rs1206365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1206367	0.86[ASW][hapmap]
rs1206368	0.86[ASW][hapmap]
rs1206369	0.86[ASW][hapmap]
rs1206385	0.89[CHB][hapmap];0.89[JPT][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13229261	0.85[CEU][hapmap];0.86[GIH][hapmap];0.81[JPT][hapmap]
rs1725066	0.86[ASW][hapmap]
rs1860507	0.86[ASW][hapmap]
rs279667	0.80[CHB][hapmap]
rs279668	0.86[ASW][hapmap]
rs279674	0.86[ASW][hapmap]
rs279699	0.86[ASW][hapmap]
rs4236613	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6964319	0.89[CEU][hapmap];0.92[GIH][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs940421	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1147504	TAS2R16	cis	parietal	SCAN

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121634400-121706000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121645800-121654000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:121648400-121654200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:121649000-121654000	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:121649000-121654000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:121649200-121654000	Strong transcription	H9 Cell Line	embryonic stem cell
7	chr7:121649600-121654000	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr7:121649800-121654200	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:121649800-121655200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:121650000-121653800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:121650000-121654000	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr7:121650000-121654000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:121650000-121654000	Strong transcription	Fetal Brain Female	brain
14	chr7:121650200-121653400	Weak transcription	Brain Substantia Nigra	brain
15	chr7:121650200-121653800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:121650200-121654600	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:121650400-121653800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:121650400-121654000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr7:121650800-121653400	Weak transcription	Brain Anterior Caudate	brain
20	chr7:121650800-121653800	Strong transcription	Fetal Brain Male	brain
21	chr7:121650800-121654000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
22	chr7:121651000-121654000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:121651000-121654000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr7:121651200-121717600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr7:121651600-121654000	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:121651600-121655200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr7:121651800-121653400	Weak transcription	Esophagus	oesophagus
28	chr7:121651800-121653800	Weak transcription	Aorta	Aorta
29	chr7:121651800-121655000	Weak transcription	Brain Angular Gyrus	brain
30	chr7:121651800-121655400	Weak transcription	Gastric	stomach
31	chr7:121652000-121653600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr7:121652200-121655800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr7:121652200-121679000	Weak transcription	NHEK	skin
34	chr7:121652400-121683200	Weak transcription	Brain Germinal Matrix	brain
35	chr7:121652600-121653600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr7:121652600-121653800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:121652800-121654000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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