Variant report

Variant	rs1147492
Chromosome Location	chr7:121676924-121676925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1147490	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1147493	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1147494	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1147502	1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs1147504	1.00[YRI][hapmap]
rs1206351	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1206352	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1206353	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1206354	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1206356	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1206357	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1206358	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1206359	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1206360	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1206363	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1206364	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1206367	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1206368	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1206369	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1206373	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1206374	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1206376	0.81[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1206379	0.87[ASN][1000 genomes]
rs1206380	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1206382	0.92[ASN][1000 genomes]
rs1206385	0.81[AMR][1000 genomes]
rs12217	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1725066	0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1860507	0.81[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2533862	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs279663	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs279664	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs279666	0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs279667	0.94[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs279668	0.81[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs279669	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs279671	0.85[ASN][1000 genomes]
rs279674	0.81[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs279675	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs279677	0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs279699	0.85[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs279704	0.85[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs279706	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs758692	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs969549	0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608334	chr7:121670522-121725961	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121634400-121706000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121651200-121717600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:121652200-121679000	Weak transcription	NHEK	skin
4	chr7:121652400-121683200	Weak transcription	Brain Germinal Matrix	brain
5	chr7:121654000-121679000	Weak transcription	Fetal Brain Female	brain
6	chr7:121654000-121679400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:121655600-121699000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:121663800-121705600	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr7:121667400-121678000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:121667800-121696200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr7:121668000-121696800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:121668200-121697000	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:121670600-121680600	Weak transcription	Fetal Brain Male	brain
14	chr7:121671200-121681800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr7:121671200-121696800	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:121672200-121697200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:121672400-121678200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr7:121672800-121679800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:121673200-121688000	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr7:121673200-121688600	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr7:121673600-121679400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:121674000-121687800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr7:121675200-121677400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:121675600-121688000	Strong transcription	H9 Cell Line	embryonic stem cell
25	chr7:121676400-121677400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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