Variant report

Variant	rs1206351
Chromosome Location	chr7:121686816-121686817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1147490	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1147492	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1147493	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1147494	0.86[ASN][1000 genomes]
rs1206352	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1206353	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1206354	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1206356	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1206357	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1206358	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1206359	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1206360	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1206363	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1206364	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1206367	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1206368	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1206369	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1206373	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1206374	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1206376	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1206379	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1206380	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1206382	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12217	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1725066	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1860507	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2533862	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs279663	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs279664	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs279666	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs279667	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs279668	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs279669	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs279671	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs279674	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs279675	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs279677	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs279699	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs279704	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs279706	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs758692	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs969549	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608334	chr7:121670522-121725961	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121634400-121706000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121651200-121717600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:121655600-121699000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:121663800-121705600	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:121667800-121696200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:121668000-121696800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:121668200-121697000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:121671200-121696800	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:121672200-121697200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:121673200-121688000	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:121673200-121688600	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr7:121674000-121687800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:121675600-121688000	Strong transcription	H9 Cell Line	embryonic stem cell
14	chr7:121677400-121688800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:121678400-121701800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr7:121679400-121692000	Weak transcription	Brain Substantia Nigra	brain
17	chr7:121680200-121689000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:121680800-121688000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
19	chr7:121681000-121691800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:121681000-121693800	Weak transcription	Fetal Brain Male	brain
21	chr7:121682000-121693200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:121682000-121694800	Weak transcription	Brain Angular Gyrus	brain
23	chr7:121682400-121716600	Weak transcription	Brain Anterior Caudate	brain
24	chr7:121682800-121687000	Strong transcription	Fetal Brain Female	brain
25	chr7:121683200-121687800	Strong transcription	Brain Germinal Matrix	brain
26	chr7:121684400-121734400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:121685000-121772000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr7:121685200-121687600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr7:121685200-121716800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr7:121685400-121725200	Weak transcription	NHEK	skin
31	chr7:121685800-121689600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr7:121686600-121688000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
33	chr7:121686800-121691400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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