Variant report

Variant	rs1206363
Chromosome Location	chr7:121695543-121695544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:121695535-121695883	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121694544..121696684-chr7:121697590..121700568,2	MCF-7	breast:
2	chr7:121688053..121690814-chr7:121693064..121695575,2	K562	blood:

Variant related genes	Relation type
PTPRZ1	TF binding region
ENSG00000106278	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1147490	0.87[ASN][1000 genomes]
rs1147492	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1147493	0.93[ASN][1000 genomes]
rs1147494	0.87[ASN][1000 genomes]
rs1206351	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1206352	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1206353	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1206354	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1206356	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1206357	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1206358	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1206359	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1206360	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1206364	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1206367	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1206368	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1206369	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1206373	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1206374	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1206376	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1206379	0.91[ASN][1000 genomes]
rs1206380	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1206382	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12217	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1725066	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1860507	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2533862	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs279663	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs279664	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs279666	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs279667	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs279668	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs279669	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs279671	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs279674	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs279675	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs279677	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs279699	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs279704	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs279706	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs758692	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs969549	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608334	chr7:121670522-121725961	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121634400-121706000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121651200-121717600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:121655600-121699000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:121663800-121705600	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:121667800-121696200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:121668000-121696800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:121668200-121697000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:121671200-121696800	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:121672200-121697200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:121678400-121701800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:121682400-121716600	Weak transcription	Brain Anterior Caudate	brain
12	chr7:121684400-121734400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:121685000-121772000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:121685200-121716800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr7:121685400-121725200	Weak transcription	NHEK	skin
16	chr7:121688800-121696400	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:121692200-121716800	Weak transcription	Brain Hippocampus Middle	brain
18	chr7:121692400-121717200	Weak transcription	Brain Substantia Nigra	brain
19	chr7:121692600-121698400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:121693400-121700200	Weak transcription	Brain Germinal Matrix	brain
21	chr7:121694200-121698800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr7:121694200-121698800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:121694200-121699000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:121694200-121699200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:121694200-121699600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr7:121694200-121699800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:121694400-121696000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:121694400-121726000	Weak transcription	Fetal Brain Male	brain
29	chr7:121694800-121695800	Enhancers	HUVEC	blood vessel
30	chr7:121694800-121696200	Weak transcription	Fetal Brain Female	brain
31	chr7:121695200-121696000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr7:121695200-121698600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr7:121695400-121696400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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