Variant report

Variant	rs1147502
Chromosome Location	chr7:121660930-121660931
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1147492	1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs1147493	0.92[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs1147494	0.92[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1147495	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1147504	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1206352	1.00[YRI][hapmap]
rs1206353	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs1206359	1.00[YRI][hapmap]
rs1206360	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs1206364	1.00[YRI][hapmap]
rs1206365	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1206367	0.86[ASW][hapmap]
rs1206368	0.86[ASW][hapmap]
rs1206369	0.86[ASW][hapmap]
rs1206385	0.94[CHB][hapmap];0.94[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13229261	0.85[CEU][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap]
rs1725066	0.86[ASW][hapmap]
rs1860507	0.86[ASW][hapmap]
rs279668	0.86[ASW][hapmap]
rs279674	0.86[ASW][hapmap]
rs279699	0.86[ASW][hapmap]
rs4236613	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6964319	0.89[CEU][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs940421	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv967495	chr7:121660234-121666665	Strong transcription Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1147502	TAS2R16	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121634400-121706000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121651200-121717600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:121652200-121679000	Weak transcription	NHEK	skin
4	chr7:121652400-121683200	Weak transcription	Brain Germinal Matrix	brain
5	chr7:121653800-121670200	Weak transcription	Fetal Brain Male	brain
6	chr7:121653800-121672600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:121653800-121673600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:121654000-121661200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:121654000-121664000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:121654000-121672200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:121654000-121672400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:121654000-121673200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:121654000-121675400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:121654000-121675600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:121654000-121679000	Weak transcription	Fetal Brain Female	brain
16	chr7:121654000-121679400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:121654200-121671200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr7:121655600-121699000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:121656800-121661800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:121657600-121663000	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr7:121659200-121662000	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:121660000-121664000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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