Variant report

Variant	rs1206505
Chromosome Location	chr7:121571363-121571364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1011693	0.82[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1024713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1196480	0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196481	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196483	0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196484	0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196486	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1196487	0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196488	0.83[EUR][1000 genomes]
rs1196490	0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196491	0.83[EUR][1000 genomes]
rs1196493	0.81[EUR][1000 genomes]
rs1196494	0.81[EUR][1000 genomes]
rs1196495	0.80[EUR][1000 genomes]
rs1196511	0.83[EUR][1000 genomes]
rs1206486	0.82[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1206487	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1206488	0.88[CHB][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1206490	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1206492	0.81[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1206494	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1206500	0.82[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1206501	0.94[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1206502	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1206504	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1206507	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206509	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206514	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206516	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206517	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1211621	0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs12154537	0.80[ASN][1000 genomes]
rs12671846	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13229261	0.82[CHB][hapmap]
rs13241278	0.80[ASN][1000 genomes]
rs1526314	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1721859	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1916875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1916876	0.83[EUR][1000 genomes]
rs2024252	0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28530500	0.84[EUR][1000 genomes]
rs4629793	1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4731044	0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6961716	0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6964319	0.82[CHB][hapmap]
rs6967270	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs727766	0.88[EUR][1000 genomes]
rs7794741	0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121545600-121571400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:121565800-121571400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:121565800-121571400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:121565800-121576800	Weak transcription	Fetal Brain Female	brain
5	chr7:121566000-121571600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:121566600-121571400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:121566800-121571400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:121566800-121571600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:121567400-121571400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:121567600-121571400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:121569000-121571400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:121570200-121571600	Genic enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:121570400-121571400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:121570800-121573000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
15	chr7:121570800-121573200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:121571000-121571400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:121571000-121571400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:121571000-121571800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr7:121571000-121572600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:121571000-121573000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:121571000-121573000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr7:121571200-121571600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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