Variant report

Variant	rs1206490
Chromosome Location	chr7:121554212-121554213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1007784	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1011693	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1024713	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11767822	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1196480	0.81[EUR][1000 genomes]
rs1196481	0.81[EUR][1000 genomes]
rs1196483	0.81[EUR][1000 genomes]
rs1196484	0.81[EUR][1000 genomes]
rs1196487	0.82[EUR][1000 genomes]
rs1196490	0.82[EUR][1000 genomes]
rs1196511	0.83[EUR][1000 genomes]
rs1206473	0.84[ASN][1000 genomes]
rs1206477	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1206480	0.88[ASN][1000 genomes]
rs1206481	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1206482	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1206483	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1206486	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1206487	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206488	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206494	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206500	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1206501	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1206502	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1206504	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1206505	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1206507	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1206509	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1206514	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1206516	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1206517	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1211621	0.83[EUR][1000 genomes]
rs12671846	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1526314	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1721859	0.81[EUR][1000 genomes]
rs1916875	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2024252	0.82[EUR][1000 genomes]
rs28530500	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4629793	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4731044	0.82[EUR][1000 genomes]
rs6961716	0.82[EUR][1000 genomes]
rs6967270	0.82[EUR][1000 genomes]
rs727766	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121531200-121558200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:121545600-121571400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:121550000-121554800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:121550200-121555000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:121550600-121561400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr7:121551800-121555800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:121552200-121558000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:121552400-121555200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:121553000-121555200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:121553400-121554800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:121553400-121554800	Weak transcription	Brain Anterior Caudate	brain
12	chr7:121553400-121555000	Weak transcription	Fetal Brain Female	brain
13	chr7:121553600-121555000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr7:121553600-121555600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr7:121553800-121555400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr7:121554000-121554600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:121554200-121554600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:121554200-121554600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr7:121554200-121554600	Flanking Active TSS	Brain Germinal Matrix	brain
20	chr7:121554200-121555000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:121554200-121555400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr7:121554200-121556400	Weak transcription	Fetal Brain Male	brain

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