Variant report

Variant	rs1916875
Chromosome Location	chr7:121603268-121603269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1011693	0.92[CEU][hapmap];0.86[CHB][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1024713	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11767822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1196478	0.83[EUR][1000 genomes]
rs1196480	0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1196481	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196483	0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196484	0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196486	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1196487	0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196490	0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196511	0.89[EUR][1000 genomes]
rs1206486	0.89[CEU][hapmap];0.87[CHB][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1206487	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1206488	0.88[CEU][hapmap];0.86[CHB][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1206490	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1206492	0.88[CEU][hapmap];0.86[CHB][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1206494	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1206500	0.87[CHB][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1206501	0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1206502	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1206504	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1206505	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1206507	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1206509	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1206514	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1206516	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1206517	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1211621	0.80[CEU][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes]
rs12154537	0.82[ASN][1000 genomes]
rs12671846	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13229261	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs13241278	0.82[ASN][1000 genomes]
rs1526314	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1721857	0.84[EUR][1000 genomes]
rs1721858	0.83[EUR][1000 genomes]
rs1721859	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2024252	0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2690271	0.83[EUR][1000 genomes]
rs2690272	0.84[EUR][1000 genomes]
rs28530500	0.83[EUR][1000 genomes]
rs35258872	0.81[ASN][1000 genomes]
rs35662069	0.81[ASN][1000 genomes]
rs4629793	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731044	0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6961716	0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6964319	0.86[CHB][hapmap]
rs6967270	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs727766	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs7794741	0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121582600-121617600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:121592000-121609600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:121596000-121618400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:121601600-121606000	Weak transcription	Fetal Brain Male	brain
5	chr7:121601600-121628000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:121601800-121603400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:121601800-121604800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:121601800-121607200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:121601800-121625600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:121602000-121603400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:121602000-121603400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:121602000-121603400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:121602000-121605200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:121602000-121614600	Weak transcription	Fetal Brain Female	brain
15	chr7:121602200-121603600	Weak transcription	HMEC	breast
16	chr7:121602400-121618200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:121602600-121605600	Weak transcription	Brain Germinal Matrix	brain
18	chr7:121602800-121603400	Enhancers	NHEK	skin
19	chr7:121603200-121603600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr7:121603200-121603600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:121603200-121603800	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:121603200-121604000	Enhancers	H1 Cell Line	embryonic stem cell
23	chr7:121603200-121604000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:121603200-121604000	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr7:121603200-121604600	Genic enhancers	HUES64 Cell Line	embryonic stem cell
26	chr7:121603200-121605000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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