Variant report

Variant	rs1196479
Chromosome Location	chr7:121598243-121598244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10230001	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10247948	0.83[EUR][1000 genomes]
rs10272363	0.83[EUR][1000 genomes]
rs1196480	0.94[YRI][hapmap]
rs1196483	0.87[YRI][hapmap]
rs1196484	0.89[YRI][hapmap]
rs1196487	0.89[YRI][hapmap]
rs1196489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1196490	0.94[YRI][hapmap]
rs1196509	1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[AMR][1000 genomes]
rs1206479	0.84[AMR][1000 genomes]
rs1206484	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1206485	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1206489	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1206491	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1206496	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1206498	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1206499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1206503	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1206508	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1206510	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1206512	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1206513	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1206518	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206519	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024252	0.94[YRI][hapmap]
rs279673	1.00[JPT][hapmap]
rs28493707	0.83[EUR][1000 genomes]
rs28582021	0.83[EUR][1000 genomes]
rs3757542	1.00[JPT][hapmap]
rs4731044	0.89[YRI][hapmap]
rs60700889	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961716	0.94[YRI][hapmap]
rs73717744	0.83[EUR][1000 genomes]
rs7794741	0.94[YRI][hapmap]
rs7809545	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv966880	chr7:121596048-121599300	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121571800-121601200	Weak transcription	Esophagus	oesophagus
2	chr7:121582600-121617600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:121586200-121601200	Weak transcription	Fetal Brain Female	brain
4	chr7:121592000-121609600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:121593000-121600800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:121593400-121598600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:121594400-121599600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:121595200-121600600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:121595400-121599200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:121595400-121600000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:121595400-121600000	Weak transcription	Fetal Brain Male	brain
12	chr7:121595400-121600000	Weak transcription	NHEK	skin
13	chr7:121595400-121600800	Weak transcription	NHDF-Ad	bronchial
14	chr7:121595400-121601000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:121595400-121601200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:121595400-121601400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:121595600-121599200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr7:121595600-121600600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr7:121595800-121600800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr7:121595800-121600800	Weak transcription	NH-A	brain
21	chr7:121595800-121601000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:121596000-121600800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:121596000-121618400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:121596800-121601200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:121597400-121598400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:121597400-121598800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:121597600-121601200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr7:121597800-121600800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr7:121597800-121601200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr7:121598000-121599200	Strong transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links