Variant report

Variant	rs7809545
Chromosome Location	chr7:121565943-121565944
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10230001	1.00[EUR][1000 genomes]
rs10247948	1.00[EUR][1000 genomes]
rs10272363	1.00[EUR][1000 genomes]
rs10275500	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1196479	0.83[EUR][1000 genomes]
rs1196489	0.83[EUR][1000 genomes]
rs1206518	0.83[EUR][1000 genomes]
rs1206519	0.83[EUR][1000 genomes]
rs17524836	0.93[EUR][1000 genomes]
rs28446411	0.93[EUR][1000 genomes]
rs28493707	1.00[EUR][1000 genomes]
rs28582021	1.00[EUR][1000 genomes]
rs41281698	0.93[EUR][1000 genomes]
rs60700889	0.83[EUR][1000 genomes]
rs73440955	0.93[EUR][1000 genomes]
rs73440957	0.93[EUR][1000 genomes]
rs73440958	0.93[EUR][1000 genomes]
rs73440961	0.93[EUR][1000 genomes]
rs73717744	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121545600-121571400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:121561800-121566000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:121562600-121566800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:121563200-121566600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:121564000-121566200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:121564400-121566000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:121564600-121566800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:121565000-121566200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr7:121565000-121566600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:121565200-121566200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:121565200-121566400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:121565600-121566000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:121565600-121567800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr7:121565600-121568600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr7:121565600-121571000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:121565800-121566200	Weak transcription	Fetal Brain Male	brain
17	chr7:121565800-121571000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr7:121565800-121571400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr7:121565800-121571400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:121565800-121576800	Weak transcription	Fetal Brain Female	brain

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