Variant report

Variant	rs1206489
Chromosome Location	chr7:121552630-121552631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1196479	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1196489	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1196509	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1206479	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1206484	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206485	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1206491	1.00[ASN][1000 genomes]
rs1206496	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206498	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206499	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206503	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206508	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1206510	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1206512	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1206513	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1206518	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1206519	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60700889	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73437106	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121531200-121558200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:121534800-121554200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:121542200-121553200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:121545600-121571400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:121546000-121553600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:121550000-121554800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:121550200-121553000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:121550200-121554000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:121550200-121555000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:121550400-121553000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:121550400-121553200	Weak transcription	Brain Germinal Matrix	brain
12	chr7:121550600-121561400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr7:121551400-121554000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:121551800-121555800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:121552200-121553400	Enhancers	Fetal Brain Female	brain
16	chr7:121552200-121558000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr7:121552400-121553400	Enhancers	Brain Anterior Caudate	brain
18	chr7:121552400-121553400	Enhancers	Fetal Brain Male	brain
19	chr7:121552400-121555200	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr7:121552600-121553400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr7:121552600-121553600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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