Variant report

Variant	rs1206499
Chromosome Location	chr7:121562207-121562208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1196479	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1196489	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1196509	1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1206479	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1206484	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206485	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1206489	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206491	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1206496	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206498	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206503	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206508	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1206510	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1206512	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1206513	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1206518	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1206519	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs279673	1.00[JPT][hapmap]
rs3757542	1.00[JPT][hapmap]
rs60700889	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73437106	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121545600-121571400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:121555000-121563600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:121555400-121565000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr7:121557400-121565600	Weak transcription	Fetal Brain Male	brain
5	chr7:121557600-121564400	Weak transcription	Brain Germinal Matrix	brain
6	chr7:121558400-121565000	Weak transcription	Fetal Brain Female	brain
7	chr7:121559600-121564600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:121560200-121562400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:121560600-121564600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:121561400-121562800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr7:121561400-121565000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr7:121561400-121565800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr7:121561600-121562600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:121561600-121563800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:121561600-121564200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr7:121561800-121563000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:121561800-121563200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:121561800-121563400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:121561800-121566000	Enhancers	Cortex derived primary cultured neurospheres	brain

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