Variant report

Variant	rs740960
Chromosome Location	chr7:121526378-121526379
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121516663..121519300-chr7:121525306..121527311,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1007522	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1007784	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10246475	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10275407	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11978007	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206473	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1206477	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1206480	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1206481	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1206482	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1206483	0.94[EUR][1000 genomes]
rs12666526	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1916880	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1916883	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1916886	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1916887	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1916888	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1916889	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2024249	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2191782	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2215572	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2402590	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28530500	0.84[ASN][1000 genomes]
rs3757549	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3757550	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs740963	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs740964	0.90[EUR][1000 genomes]
rs7778179	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7802916	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7808915	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7809971	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7811200	0.86[ASN][1000 genomes]
rs960539	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121515600-121543600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121521600-121529800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:121522000-121530400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:121522400-121527600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:121522400-121528400	Enhancers	Fetal Brain Male	brain
6	chr7:121522600-121526800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:121522600-121550000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:121523200-121539800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:121523200-121552600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:121523600-121529800	Weak transcription	NHEK	skin
11	chr7:121523800-121527200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:121525000-121527000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr7:121525400-121531600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:121525600-121527600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:121525600-121530800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:121525800-121527000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:121525800-121527600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr7:121526000-121526400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr7:121526000-121526400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
20	chr7:121526000-121526400	Flanking Active TSS	Fetal Brain Female	brain
21	chr7:121526000-121530000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr7:121526200-121526600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr7:121526200-121531000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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