Variant report

Variant	rs12540905
Chromosome Location	chr7:121448702-121448703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1014171	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10238474	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10238868	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11766572	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11766594	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11766616	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11983105	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12111892	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12535478	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13231796	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13243402	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2052131	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2052132	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2052134	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2109764	0.88[EUR][1000 genomes]
rs2402589	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4731038	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs740961	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs740962	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121440600-121450400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:121443200-121458800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:121447600-121451200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:121448200-121451200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:121448200-121452200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links