Variant report

Variant	rs11967100
Chromosome Location	chr6:142891606-142891607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:142885913..142888379-chr6:142890685..142893143,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11962041	0.87[AMR][1000 genomes]
rs11963289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11967976	0.87[AMR][1000 genomes]
rs11968504	0.87[AMR][1000 genomes]
rs1361481	1.00[AFR][1000 genomes]
rs17071860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34207438	1.00[AFR][1000 genomes]
rs9689935	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs988704	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv520479	chr6:142869099-142908146	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142887600-142892200	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr6:142887600-142892200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr6:142887600-142892200	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr6:142887600-142892600	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr6:142887800-142892000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr6:142887800-142892200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:142888000-142892800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:142888200-142892000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:142888200-142892200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:142888400-142891800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:142888400-142893400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:142888600-142892000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:142888800-142891800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:142888800-142892000	Enhancers	Rectal Smooth Muscle	rectum
15	chr6:142889200-142892200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:142889200-142892600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr6:142889200-142893600	Enhancers	Dnd41	blood
18	chr6:142889400-142891800	Enhancers	Fetal Thymus	thymus
19	chr6:142889400-142892600	Enhancers	HSMM	muscle
20	chr6:142889400-142893200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:142889600-142891800	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr6:142889600-142892200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:142889600-142892200	Enhancers	HSMMtube	muscle
24	chr6:142889800-142892000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:142889800-142892000	Enhancers	Osteobl	bone
26	chr6:142889800-142893400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:142890000-142892000	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr6:142890000-142892200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr6:142890000-142892200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:142890200-142892000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr6:142890200-142892400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:142890400-142891800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:142890400-142892000	Enhancers	Stomach Mucosa	stomach
34	chr6:142890400-142892200	Enhancers	Muscle Satellite Cultured Cells	--
35	chr6:142890600-142892000	Enhancers	Placenta Amnion	Placenta Amnion
36	chr6:142890600-142892000	Enhancers	Thymus	Thymus
37	chr6:142890600-142892000	Enhancers	NHLF	lung
38	chr6:142890800-142892200	Enhancers	NH-A	brain
39	chr6:142891200-142893400	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr6:142891400-142891800	Enhancers	H9 Cell Line	embryonic stem cell
41	chr6:142891400-142891800	Enhancers	Primary T cells fromperipheralblood	blood
42	chr6:142891400-142891800	Weak transcription	Fetal Intestine Small	intestine
43	chr6:142891400-142891800	Flanking Active TSS	HMEC	breast
44	chr6:142891400-142893800	Enhancers	Primary T cells from cord blood	blood
45	chr6:142891600-142892800	Enhancers	NHEK	skin
46	chr6:142891600-142895200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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