Variant report

Variant	rs9689935
Chromosome Location	chr6:142881382-142881383
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11962041	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11963289	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11967100	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11967976	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11968504	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12214216	1.00[ASN][1000 genomes]
rs1361481	0.85[AFR][1000 genomes]
rs17071860	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs34207438	0.85[AFR][1000 genomes]
rs6900521	1.00[ASN][1000 genomes]
rs72984377	1.00[ASN][1000 genomes]
rs7757965	1.00[ASN][1000 genomes]
rs802618	1.00[ASN][1000 genomes]
rs988704	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv520479	chr6:142869099-142908146	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142873600-142888800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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