Variant report

Variant	rs11967976
Chromosome Location	chr6:142872491-142872492
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11962041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11963289	0.87[AMR][1000 genomes]
rs11967100	0.87[AMR][1000 genomes]
rs11968504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17071860	0.87[AMR][1000 genomes]
rs9689935	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv520479	chr6:142869099-142908146	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142869400-142872800	Enhancers	Dnd41	blood
2	chr6:142869600-142873200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr6:142871000-142872600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:142871000-142873200	Enhancers	HSMMtube	muscle
5	chr6:142871400-142872600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:142871400-142872800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:142871400-142873000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:142871400-142873200	Enhancers	Fetal Stomach	stomach
9	chr6:142871400-142873200	Enhancers	HSMM	muscle
10	chr6:142871400-142873400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:142871600-142873200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr6:142871600-142873600	Enhancers	Fetal Lung	lung
13	chr6:142871800-142872800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:142871800-142873000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:142871800-142873000	Enhancers	Fetal Muscle Leg	muscle
16	chr6:142871800-142873000	Enhancers	Fetal Thymus	thymus
17	chr6:142872000-142873200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr6:142872000-142873600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:142872200-142872800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:142872200-142872800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr6:142872200-142873200	Flanking Active TSS	HMEC	breast
22	chr6:142872200-142873600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr6:142872400-142872600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr6:142872400-142872800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
25	chr6:142872400-142872800	Enhancers	Esophagus	oesophagus
26	chr6:142872400-142873000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:142872400-142873000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:142872400-142873000	Flanking Active TSS	Primary T cells from cord blood	blood
29	chr6:142872400-142873000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:142872400-142873000	Enhancers	NH-A	brain
31	chr6:142872400-142873000	Bivalent Enhancer	Osteobl	bone
32	chr6:142872400-142873200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:142872400-142873200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:142872400-142873200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:142872400-142873200	Flanking Active TSS	NHEK	skin

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