Variant report

Variant	rs11968109
Chromosome Location	chr6:29417571-29417572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16894941	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16894971	0.81[AFR][1000 genomes]
rs17177646	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56034620	1.00[EUR][1000 genomes]
rs56062033	1.00[EUR][1000 genomes]
rs60012304	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60225580	1.00[EUR][1000 genomes]
rs61706622	0.81[AFR][1000 genomes]
rs61730332	1.00[EUR][1000 genomes]
rs6903755	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7341211	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745913	0.83[AFR][1000 genomes]
rs7746192	0.81[AFR][1000 genomes]
rs7756110	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7764048	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29414200-29418000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:29415600-29418800	Weak transcription	NHEK	skin
3	chr6:29416200-29418000	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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