Variant report

Variant	rs17177646
Chromosome Location	chr6:29408204-29408205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11961991	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11968109	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16894941	1.00[EUR][1000 genomes]
rs17177639	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17184009	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56062033	1.00[EUR][1000 genomes]
rs60225580	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61730332	1.00[EUR][1000 genomes]
rs6907565	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6908560	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29407800-29408400	Enhancers	Esophagus	oesophagus
2	chr6:29407800-29408600	Active TSS	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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