Variant report
| Variant | rs6908560 |
|---|---|
| Chromosome Location | chr6:29403272-29403273 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:29403021..29405389-chr6:29406717..29409334,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000206474 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11755177 | 1.00[ASN][1000 genomes] |
| rs11757272 | 1.00[ASN][1000 genomes] |
| rs11961991 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11963957 | 1.00[EUR][1000 genomes] |
| rs16894923 | 1.00[ASN][1000 genomes] |
| rs16894930 | 1.00[ASN][1000 genomes] |
| rs16894971 | 1.00[EUR][1000 genomes] |
| rs17177639 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17177646 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17184009 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58774316 | 1.00[ASN][1000 genomes] |
| rs58855769 | 1.00[ASN][1000 genomes] |
| rs60012304 | 1.00[EUR][1000 genomes] |
| rs60225580 | 0.81[AFR][1000 genomes] |
| rs61201055 | 1.00[ASN][1000 genomes] |
| rs61706622 | 1.00[EUR][1000 genomes] |
| rs6903755 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6907565 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7341211 | 1.00[EUR][1000 genomes] |
| rs7746192 | 1.00[EUR][1000 genomes] |
| rs7756110 | 1.00[EUR][1000 genomes] |
| rs7764048 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830624 | chr6:29274525-29445565 | Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
