Variant report
| Variant | rs11963957 |
|---|---|
| Chromosome Location | chr6:29446855-29446856 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:11)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:11 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr6:29446459-29446920 | MCF-7 | breast: | n/a | chr6:29446683-29446694 |
| 2 | CEBPB | chr6:29446497-29446878 | H1-hESC | embryonic stem cell: | n/a | chr6:29446683-29446694 |
| 3 | CEBPB | chr6:29446497-29446881 | HepG2 | liver: | n/a | chr6:29446683-29446694 |
| 4 | CEBPB | chr6:29446495-29446878 | IMR90 | lung: | n/a | chr6:29446683-29446694 |
| 5 | CEBPB | chr6:29446554-29446877 | A549 | lung: | n/a | chr6:29446683-29446694 |
| 6 | CEBPB | chr6:29446483-29446932 | K562 | blood: | n/a | chr6:29446683-29446694 |
| 7 | CEBPB | chr6:29446581-29446887 | ECC-1 | luminal epithelium: | n/a | chr6:29446683-29446694 |
| 8 | CEBPB | chr6:29446443-29446969 | MCF-7 | breast: | n/a | chr6:29446683-29446694 |
| 9 | CEBPB | chr6:29446488-29446990 | A549 | lung: | n/a | chr6:29446683-29446694 |
| 10 | CEBPB | chr6:29446494-29446887 | A549 | lung: | n/a | chr6:29446683-29446694 |
| 11 | CEBPB | chr6:29446448-29447033 | K562 | blood: | n/a | chr6:29446683-29446694 |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-MAS1L-1 | chr6:29446851-29447059 | XLOC_005668 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MAS1LP1 | TF binding region |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs11961991 | 1.00[EUR][1000 genomes] |
| rs16894971 | 1.00[EUR][1000 genomes] |
| rs17177639 | 1.00[EUR][1000 genomes] |
| rs17184009 | 1.00[EUR][1000 genomes] |
| rs60012304 | 1.00[EUR][1000 genomes] |
| rs61706622 | 1.00[EUR][1000 genomes] |
| rs6903755 | 1.00[EUR][1000 genomes] |
| rs6907565 | 1.00[EUR][1000 genomes] |
| rs6908560 | 1.00[EUR][1000 genomes] |
| rs7341211 | 1.00[EUR][1000 genomes] |
| rs7746192 | 1.00[EUR][1000 genomes] |
| rs7756110 | 1.00[EUR][1000 genomes] |
| rs7764048 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3424039 | chr6:29439297-29504564 | Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
