Variant report

Variant	rs7764048
Chromosome Location	chr6:29424032-29424033
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11961991	1.00[EUR][1000 genomes]
rs11963957	1.00[EUR][1000 genomes]
rs11968109	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894941	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894971	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17177639	1.00[EUR][1000 genomes]
rs17184009	1.00[EUR][1000 genomes]
rs60012304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61706622	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6903755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907565	1.00[EUR][1000 genomes]
rs6908560	1.00[EUR][1000 genomes]
rs7341211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7745913	0.88[AFR][1000 genomes]
rs7746192	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7756110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29418400-29427400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:29423800-29426200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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