Variant report

Variant	rs11968309
Chromosome Location	chr6:4669879-4669880
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17138658	1.00[AMR][1000 genomes]
rs436135	1.00[AMR][1000 genomes]
rs73354619	1.00[AMR][1000 genomes]
rs73354622	1.00[AMR][1000 genomes]
rs73354632	1.00[AMR][1000 genomes]
rs73354641	1.00[AMR][1000 genomes]
rs73354652	1.00[AMR][1000 genomes]
rs73354668	1.00[AMR][1000 genomes]
rs73356662	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv528627	chr6:4614058-4731340	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv883416	chr6:4666878-4690760	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4665000-4670400	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:4665000-4680400	Weak transcription	Right Atrium	heart
3	chr6:4665200-4670400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:4666000-4670400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:4666600-4672400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:4668200-4675000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:4669000-4670600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:4669000-4672400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:4669000-4695600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:4669200-4672600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:4669400-4671200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:4669400-4672200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:4669400-4672400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:4669400-4677600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:4669600-4670600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:4669600-4670600	Weak transcription	K562	blood
17	chr6:4669600-4671000	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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