Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:4671964..4676370-chr6:4676405..4678296,5	K562	blood:
2	chr6:4646609..4648240-chr6:4675199..4677622,2	MCF-7	breast:
3	chr6:4675333..4676875-chr6:4782888..4785440,2	MCF-7	breast:
4	chr6:4669614..4671479-chr6:4675062..4677327,2	MCF-7	breast:
5	chr6:4668064..4670933-chr6:4672620..4676191,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPP40-9	chr6:4675353-4676068	NONHSAT107473

rSNPs within LD-proxies of this variant (count:9)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv528627	chr6:4614058-4731340	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv883416	chr6:4666878-4690760	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4665000-4680400	Weak transcription	Right Atrium	heart
2	chr6:4669000-4695600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:4669400-4677600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:4672600-4675800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:4673000-4675800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:4673200-4675600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:4673600-4677800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:4674200-4677600	Weak transcription	Placenta	Placenta
9	chr6:4674600-4675600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:4675000-4675600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:4675000-4675800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:4675200-4675600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:4675200-4675800	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:4675200-4675800	Enhancers	Brain Substantia Nigra	brain
15	chr6:4675400-4675600	Enhancers	Brain Germinal Matrix	brain
16	chr6:4675400-4675600	Bivalent Enhancer	Fetal Stomach	stomach
17	chr6:4675400-4675800	Enhancers	Brain Angular Gyrus	brain
18	chr6:4675400-4675800	Enhancers	Brain Anterior Caudate	brain
19	chr6:4675400-4675800	Enhancers	Brain Cingulate Gyrus	brain
20	chr6:4675400-4675800	Enhancers	Brain Hippocampus Middle	brain

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