Variant report

Variant	rs73354641
Chromosome Location	chr6:4677472-4677473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11968309	1.00[AMR][1000 genomes]
rs17138658	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs436135	1.00[AMR][1000 genomes]
rs73354619	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354622	1.00[AMR][1000 genomes]
rs73354632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354652	1.00[AMR][1000 genomes]
rs73354668	1.00[AMR][1000 genomes]
rs73356662	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv528627	chr6:4614058-4731340	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv883416	chr6:4666878-4690760	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4665000-4680400	Weak transcription	Right Atrium	heart
2	chr6:4669000-4695600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:4669400-4677600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:4673600-4677800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:4674200-4677600	Weak transcription	Placenta	Placenta
6	chr6:4675600-4684000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:4675800-4677600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:4676000-4677600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:4676200-4678800	Weak transcription	K562	blood
10	chr6:4677400-4678200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:4677400-4678200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:4677400-4678200	Enhancers	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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