Variant report

Variant	rs11969885
Chromosome Location	chr6:5694930-5694931
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11966167	1.00[AFR][1000 genomes]
rs11969845	1.00[YRI][hapmap]
rs12198644	1.00[YRI][hapmap]
rs6900682	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916361	chr6:5315853-5695486	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3473790	chr6:5692573-5707035	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3473791	chr6:5692573-5707035	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv823407	chr6:5692735-5706712	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv970201	chr6:5693538-5699453	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3360474	chr6:5694654-5695163	Weak transcription Enhancers Strong transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5672200-5705800	Weak transcription	Thymus	Thymus
2	chr6:5673800-5701200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:5673800-5709800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:5678000-5709400	Weak transcription	Pancreas	Pancrea
5	chr6:5680600-5695400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:5680800-5695000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:5681800-5695000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr6:5682400-5695200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:5682400-5695400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:5684600-5695400	Weak transcription	Fetal Stomach	stomach
11	chr6:5684800-5696000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:5684800-5706000	Weak transcription	Ovary	ovary
13	chr6:5685000-5695400	Weak transcription	HSMMtube	muscle
14	chr6:5685000-5698600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:5691400-5698200	Weak transcription	Spleen	Spleen
16	chr6:5692600-5695000	Weak transcription	Dnd41	blood
17	chr6:5692800-5701400	Weak transcription	Right Atrium	heart
18	chr6:5693000-5696000	Weak transcription	Fetal Intestine Small	intestine
19	chr6:5693400-5695200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:5694200-5695000	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr6:5694200-5695400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:5694200-5695800	Weak transcription	NH-A	brain
23	chr6:5694400-5695000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:5694800-5696400	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr6:5694800-5696400	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links