Variant report

Variant	rs6900682
Chromosome Location	chr6:5684356-5684357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5678900..5683178-chr6:5683336..5687695,5	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10484317	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11969845	1.00[YRI][hapmap]
rs11969885	1.00[YRI][hapmap]
rs12198644	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs13218554	1.00[CHB][hapmap]
rs2326636	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6597157	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6597159	0.89[MEX][hapmap]
rs6941135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs760674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7754068	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9378982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916361	chr6:5315853-5695486	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv600887	chr6:5545046-5694713	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5672200-5705800	Weak transcription	Thymus	Thymus
2	chr6:5672400-5685600	Weak transcription	Aorta	Aorta
3	chr6:5673800-5701200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:5673800-5709800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:5678000-5686200	Weak transcription	Gastric	stomach
6	chr6:5678000-5709400	Weak transcription	Pancreas	Pancrea
7	chr6:5678200-5694000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:5678400-5693400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:5678600-5686600	Weak transcription	Right Atrium	heart
10	chr6:5680600-5684600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:5680600-5684600	Weak transcription	Spleen	Spleen
12	chr6:5680600-5695400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:5680800-5684400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:5680800-5684400	Weak transcription	HSMMtube	muscle
15	chr6:5680800-5687600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:5680800-5695000	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr6:5681800-5695000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:5682200-5693200	Weak transcription	Primary T cells from cord blood	blood
19	chr6:5682400-5684400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:5682400-5684400	Weak transcription	NHDF-Ad	bronchial
21	chr6:5682400-5684400	Weak transcription	Osteobl	bone
22	chr6:5682400-5695200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr6:5682400-5695400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:5683200-5684600	Weak transcription	Ovary	ovary
25	chr6:5683400-5684400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:5683800-5685200	Weak transcription	Fetal Intestine Small	intestine

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