Variant report

Variant	rs6941135
Chromosome Location	chr6:5696156-5696157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr6:5695261-5696387	IMR90	lung:	n/a	n/a
2	WRNIP1	chr6:5696129-5696259	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000270174	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10484317	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12198644	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13218554	1.00[CHB][hapmap]
rs2326636	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6597157	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6597159	0.81[AMR][1000 genomes]
rs6900682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs760674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754068	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9378982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3473790	chr6:5692573-5707035	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3473791	chr6:5692573-5707035	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv823407	chr6:5692735-5706712	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv970201	chr6:5693538-5699453	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5672200-5705800	Weak transcription	Thymus	Thymus
2	chr6:5673800-5701200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:5673800-5709800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:5678000-5709400	Weak transcription	Pancreas	Pancrea
5	chr6:5684800-5706000	Weak transcription	Ovary	ovary
6	chr6:5685000-5698600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:5691400-5698200	Weak transcription	Spleen	Spleen
8	chr6:5692800-5701400	Weak transcription	Right Atrium	heart
9	chr6:5694800-5696400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr6:5694800-5696400	Enhancers	Fetal Thymus	thymus
11	chr6:5695000-5696200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:5695000-5696400	Enhancers	Dnd41	blood
13	chr6:5695000-5696600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:5695200-5696200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:5695200-5696200	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr6:5695200-5696200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:5695200-5696400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:5695200-5696400	Enhancers	Primary B cells from peripheral blood	blood
19	chr6:5695200-5696400	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr6:5695200-5696400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr6:5695200-5696400	Flanking Active TSS	NHDF-Ad	bronchial
22	chr6:5695200-5696600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:5695200-5700000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:5695400-5696200	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr6:5695400-5696200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:5695400-5696200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:5695400-5696200	Enhancers	Duodenum Mucosa	Duodenum
28	chr6:5695400-5696200	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr6:5695400-5696200	Flanking Active TSS	Osteobl	bone
30	chr6:5695400-5696400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:5695400-5696400	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr6:5695400-5696400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:5695400-5696400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:5695400-5696400	Enhancers	HUVEC	blood vessel
35	chr6:5695400-5696800	Enhancers	Primary B cells from cord blood	blood
36	chr6:5695600-5696200	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr6:5695600-5696400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr6:5695800-5696200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:5695800-5696200	Flanking Active TSS	HSMM	muscle
40	chr6:5695800-5696400	Flanking Active TSS	GM12878-XiMat	blood
41	chr6:5695800-5696400	Enhancers	NH-A	brain
42	chr6:5695800-5697800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:5695800-5698400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:5695800-5698800	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr6:5695800-5699600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:5695800-5709800	Weak transcription	Fetal Stomach	stomach
47	chr6:5696000-5696200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:5696000-5696200	Enhancers	Fetal Intestine Small	intestine
49	chr6:5696000-5696400	Enhancers	Colon Smooth Muscle	Colon
50	chr6:5696000-5696400	Flanking Active TSS	HSMMtube	muscle

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