Variant report

Variant	rs12198644
Chromosome Location	chr6:5679744-5679745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:5679376..5681001-chr6:5681268..5682896,2	MCF-7	breast:
2	chr6:5668378..5671034-chr6:5677672..5680311,2	K562	blood:
3	chr6:5678900..5683178-chr6:5683336..5687695,5	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10484317	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11969845	1.00[YRI][hapmap]
rs11969885	1.00[YRI][hapmap]
rs13218554	1.00[CHB][hapmap]
rs2326636	0.95[ASN][1000 genomes]
rs6597157	1.00[ASN][1000 genomes]
rs6900682	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs6941135	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs760674	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7754068	0.91[ASN][1000 genomes]
rs9378982	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9392083	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916361	chr6:5315853-5695486	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv600887	chr6:5545046-5694713	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5671800-5680000	Weak transcription	HepG2	liver
2	chr6:5672200-5705800	Weak transcription	Thymus	Thymus
3	chr6:5672400-5685600	Weak transcription	Aorta	Aorta
4	chr6:5672600-5679800	Weak transcription	GM12878-XiMat	blood
5	chr6:5672600-5680000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr6:5673200-5679800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:5673200-5680200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:5673400-5679800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:5673800-5682800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:5673800-5701200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:5673800-5709800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:5674000-5680400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:5674000-5680600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:5674000-5681800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:5674400-5683600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:5674800-5680200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:5674800-5680400	Weak transcription	Left Ventricle	heart
18	chr6:5674800-5681600	Weak transcription	Fetal Thymus	thymus
19	chr6:5678000-5682200	Enhancers	Primary T cells from cord blood	blood
20	chr6:5678000-5682400	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr6:5678000-5686200	Weak transcription	Gastric	stomach
22	chr6:5678000-5709400	Weak transcription	Pancreas	Pancrea
23	chr6:5678200-5679800	Weak transcription	Fetal Heart	heart
24	chr6:5678200-5681600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:5678200-5681800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:5678200-5694000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:5678400-5681200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:5678400-5681200	Weak transcription	Osteobl	bone
29	chr6:5678400-5681600	Weak transcription	NHDF-Ad	bronchial
30	chr6:5678400-5693400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:5678600-5686600	Weak transcription	Right Atrium	heart
32	chr6:5678800-5680600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr6:5678800-5681800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr6:5679200-5680000	Enhancers	Spleen	Spleen
35	chr6:5679200-5680600	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr6:5679200-5680600	Enhancers	Fetal Muscle Leg	muscle
37	chr6:5679200-5682400	Enhancers	Primary B cells from peripheral blood	blood
38	chr6:5679200-5682400	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr6:5679400-5680000	Enhancers	Fetal Kidney	kidney
40	chr6:5679400-5680600	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr6:5679600-5679800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:5679600-5679800	Enhancers	Lung	lung
43	chr6:5679600-5679800	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr6:5679600-5680200	Enhancers	Primary B cells from cord blood	blood
45	chr6:5679600-5680400	Enhancers	Adipose Nuclei	Adipose
46	chr6:5679600-5680600	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr6:5679600-5680600	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr6:5679600-5680800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr6:5679600-5682000	Enhancers	Primary T helper cells fromperipheralblood	blood

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