Variant report

Variant	rs11970042
Chromosome Location	chr6:14787967-14787968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14783331..14786327-chr6:14787187..14789673,2	K562	blood:
2	chr6:14787652..14790932-chr6:14791608..14794437,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55956256	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57936219	1.00[EUR][1000 genomes]
rs6927291	1.00[EUR][1000 genomes]
rs73357695	0.80[AMR][1000 genomes]
rs73359710	1.00[EUR][1000 genomes]
rs73359716	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73359719	0.95[EUR][1000 genomes]
rs7770118	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14775600-14790000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:14783800-14788400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:14784400-14789800	Enhancers	Thymus	Thymus
4	chr6:14785000-14789600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:14785200-14788600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:14785200-14792000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:14785400-14788200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:14785400-14788600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:14785400-14790000	Enhancers	Fetal Thymus	thymus
10	chr6:14785400-14790400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr6:14785400-14791200	Weak transcription	Brain Germinal Matrix	brain
12	chr6:14785600-14788600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:14785600-14790200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:14785600-14791800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:14785800-14789400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:14785800-14792400	Weak transcription	Fetal Intestine Large	intestine
17	chr6:14786000-14790800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:14786400-14788600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:14786600-14788000	Enhancers	GM12878-XiMat	blood
20	chr6:14786800-14788200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:14787000-14788000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:14787000-14789800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:14787200-14788200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:14787200-14789200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:14787600-14792800	Enhancers	Fetal Lung	lung
26	chr6:14787800-14788000	Enhancers	H1 Cell Line	embryonic stem cell
27	chr6:14787800-14789000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr6:14787800-14789200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:14787800-14789200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:14787800-14802600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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