Variant report

Variant	rs73359710
Chromosome Location	chr6:14787308-14787309
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14783331..14786327-chr6:14787187..14789673,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11970042	1.00[EUR][1000 genomes]
rs55956256	0.89[EUR][1000 genomes]
rs57936219	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60530560	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs60852976	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs6927291	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73357696	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs73359716	1.00[EUR][1000 genomes]
rs73359719	0.95[EUR][1000 genomes]
rs7770118	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14775600-14790000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:14783800-14788400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:14784400-14789800	Enhancers	Thymus	Thymus
4	chr6:14785000-14789600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:14785200-14788600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:14785200-14792000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:14785400-14788200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:14785400-14788600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:14785400-14790000	Enhancers	Fetal Thymus	thymus
10	chr6:14785400-14790400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr6:14785400-14791200	Weak transcription	Brain Germinal Matrix	brain
12	chr6:14785600-14788600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:14785600-14790200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:14785600-14791800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:14785800-14787800	Enhancers	Primary T cells from cord blood	blood
16	chr6:14785800-14789400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:14785800-14792400	Weak transcription	Fetal Intestine Large	intestine
18	chr6:14786000-14787800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:14786000-14787800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr6:14786000-14790800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:14786400-14788600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:14786600-14787600	Weak transcription	Fetal Lung	lung
23	chr6:14786600-14787800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:14786600-14788000	Enhancers	GM12878-XiMat	blood
25	chr6:14786800-14787400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:14786800-14787800	Enhancers	Primary B cells from peripheral blood	blood
27	chr6:14786800-14788200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:14787000-14787400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:14787000-14787800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr6:14787000-14788000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:14787000-14789800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:14787200-14788200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr6:14787200-14789200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links