Variant report

Variant	rs11972474
Chromosome Location	chr7:118711743-118711744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11971211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11972499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11972555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11972788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11977162	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978021	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978125	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978161	1.00[AMR][1000 genomes]
rs11979165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11980068	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981600	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982189	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982308	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11984303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34903001	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021902	chr7:118452600-118719244	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv831110	chr7:118543340-118739362	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv889098	chr7:118590050-118896639	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv1825159	chr7:118640865-118842361	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv889099	chr7:118709754-118868426	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118710800-118711800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:118711400-118714000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:118711400-118714400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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