Variant report

Variant	rs11977162
Chromosome Location	chr7:118763499-118763500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11971211	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11972474	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11972499	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11972555	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11972788	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974027	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976099	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978161	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11979165	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11980068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982839	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982863	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11984303	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34903001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889098	chr7:118590050-118896639	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1825159	chr7:118640865-118842361	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv889099	chr7:118709754-118868426	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv889100	chr7:118744450-119247571	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118758400-118765800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:118763400-118764000	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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