Variant report

Variant	rs11972499
Chromosome Location	chr7:118739606-118739607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11971211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11972474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11972555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11972788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11977162	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978021	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978125	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978161	1.00[AMR][1000 genomes]
rs11979165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11980068	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981600	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982189	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982308	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11984303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34903001	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889098	chr7:118590050-118896639	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1825159	chr7:118640865-118842361	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv889099	chr7:118709754-118868426	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv528448	chr7:118733415-118744450	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118735400-118740600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:118736200-118739800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:118739200-118739800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:118739200-118740200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:118739200-118743200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:118739400-118740800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:118739600-118740600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:118739600-118740800	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links