Variant report

Variant	rs1197308
Chromosome Location	chr3:133101207-133101208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133101161..133103236-chr3:133110708..133113387,2	MCF-7	breast:
2	chr3:133100753..133103511-chr3:133104610..133107430,2	K562	blood:
3	chr3:133100831..133103449-chr3:133112603..133115144,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1109858	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1114630	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs1197282	0.81[CEU][hapmap];0.82[AMR][1000 genomes]
rs1197283	0.82[CEU][hapmap];0.82[AMR][1000 genomes]
rs1197288	0.83[JPT][hapmap]
rs1197296	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs1197298	0.82[JPT][hapmap]
rs1197299	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs1197302	0.82[JPT][hapmap]
rs1197304	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs1197305	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs1197306	0.83[JPT][hapmap]
rs1197309	0.82[JPT][hapmap]
rs1197313	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs1197314	0.82[JPT][hapmap]
rs1201671	0.83[JPT][hapmap]
rs1201674	0.88[AMR][1000 genomes]
rs12495802	0.82[CEU][hapmap];0.82[AMR][1000 genomes]
rs12633430	0.85[AMR][1000 genomes]
rs1513366	0.82[CEU][hapmap];0.82[AMR][1000 genomes]
rs1567788	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1619552	0.83[JPT][hapmap]
rs1619622	0.83[JPT][hapmap]
rs16840105	0.81[CEU][hapmap];0.82[AMR][1000 genomes]
rs16840179	0.81[CEU][hapmap];0.85[AMR][1000 genomes]
rs1708355	0.82[AMR][1000 genomes]
rs1708357	0.88[AMR][1000 genomes]
rs1708367	0.90[CEU][hapmap];0.82[AMR][1000 genomes]
rs1708368	0.81[CEU][hapmap];0.82[AMR][1000 genomes]
rs1708370	0.82[AMR][1000 genomes]
rs1708377	0.83[JPT][hapmap]
rs1708386	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1795097	0.82[AMR][1000 genomes]
rs1795101	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1795107	0.82[JPT][hapmap]
rs2060639	0.81[CEU][hapmap];0.82[AMR][1000 genomes]
rs2670179	0.82[JPT][hapmap]
rs2670182	0.82[AMR][1000 genomes]
rs2699882	0.82[JPT][hapmap]
rs4854576	0.81[CEU][hapmap]
rs4854582	0.82[CEU][hapmap];0.88[AMR][1000 genomes]
rs4854704	0.82[CEU][hapmap]
rs4854708	0.81[CEU][hapmap];0.82[AMR][1000 genomes]
rs4854719	0.82[CHB][hapmap]
rs55719274	0.82[AMR][1000 genomes]
rs56269716	0.82[AMR][1000 genomes]
rs59171035	0.82[AMR][1000 genomes]
rs59885161	0.82[AMR][1000 genomes]
rs938238	0.81[CEU][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877503	chr3:133035774-133104631	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133093000-133102400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:133094000-133109000	Weak transcription	HSMM	muscle
3	chr3:133094400-133102800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:133094800-133102000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:133094800-133110400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:133095200-133103200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:133095800-133103200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:133096000-133107800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:133096400-133103200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:133097800-133102400	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:133098800-133101400	Enhancers	Pancreas	Pancrea
12	chr3:133098800-133103600	Weak transcription	Spleen	Spleen
13	chr3:133098800-133103800	Enhancers	Fetal Brain Male	brain
14	chr3:133099000-133101600	Genic enhancers	Fetal Brain Female	brain
15	chr3:133099000-133117000	Weak transcription	Placenta	Placenta
16	chr3:133099600-133122600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:133099800-133103000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:133100000-133101400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr3:133100000-133101600	Enhancers	Fetal Muscle Leg	muscle
20	chr3:133100200-133103200	Weak transcription	Brain Hippocampus Middle	brain
21	chr3:133100200-133103600	Weak transcription	Brain Germinal Matrix	brain
22	chr3:133100400-133102800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:133100400-133103000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr3:133100400-133103200	Weak transcription	Brain Angular Gyrus	brain
25	chr3:133100800-133101800	Genic enhancers	Fetal Lung	lung
26	chr3:133100800-133102800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr3:133100800-133111600	Weak transcription	HSMMtube	muscle
28	chr3:133101000-133103000	Weak transcription	Liver	Liver
29	chr3:133101000-133103800	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr3:133101200-133103200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr3:133101200-133103400	Enhancers	Lung	lung

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