Variant report

Variant	rs56269716
Chromosome Location	chr3:133013045-133013046
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1109858	0.83[AMR][1000 genomes]
rs1197282	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1197283	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1197285	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1197308	0.82[AMR][1000 genomes]
rs1201674	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1209643	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12489235	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12495802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12630350	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12633430	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637523	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12639218	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1513366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16840105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16840179	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1708355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1708357	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1708367	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1708368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1708370	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1795097	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1795101	0.83[AMR][1000 genomes]
rs1992994	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2060639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2670182	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4130893	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4854576	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4854582	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4854704	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4854708	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55686499	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55719274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56325413	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59171035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59885161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs938238	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133003400-133014000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:133003400-133015400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:133003600-133014000	Weak transcription	Right Atrium	heart
4	chr3:133009800-133015400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:133010400-133016600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:133010600-133013200	Enhancers	Fetal Lung	lung
7	chr3:133010800-133013200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:133010800-133015400	Enhancers	HUVEC	blood vessel
9	chr3:133011400-133014000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:133011400-133014600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:133012000-133014200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:133012200-133015000	Enhancers	HSMM	muscle
13	chr3:133012200-133015400	Enhancers	Osteobl	bone
14	chr3:133012400-133014800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:133012400-133015400	Weak transcription	Right Ventricle	heart
16	chr3:133012400-133015600	Enhancers	NH-A	brain
17	chr3:133012600-133013200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:133012600-133014000	Weak transcription	Left Ventricle	heart
19	chr3:133012600-133014600	Weak transcription	Fetal Stomach	stomach
20	chr3:133012600-133014800	Weak transcription	Fetal Heart	heart
21	chr3:133012600-133015400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:133012800-133013200	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr3:133012800-133014000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:133012800-133014000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr3:133012800-133014200	Weak transcription	Brain Germinal Matrix	brain
26	chr3:133012800-133014200	Weak transcription	Psoas Muscle	Psoas
27	chr3:133012800-133014200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr3:133012800-133015400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr3:133013000-133014000	Weak transcription	HSMMtube	muscle
30	chr3:133013000-133014400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr3:133013000-133014400	Weak transcription	Fetal Brain Male	brain
32	chr3:133013000-133015400	Weak transcription	Fetal Brain Female	brain

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