Variant report

Variant	rs12637523
Chromosome Location	chr3:132974792-132974793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1197282	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1197283	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1197285	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1201674	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1209643	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12489235	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12495802	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12630350	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12633430	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12639218	0.89[ASN][1000 genomes]
rs1513366	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16840105	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16840179	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1708355	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1708357	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1708367	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1708368	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1708370	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1795097	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1992994	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2060639	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2670182	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4130893	0.91[ASN][1000 genomes]
rs4854576	0.91[ASN][1000 genomes]
rs4854582	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4854704	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4854708	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55686499	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs55719274	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs56269716	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56325413	0.89[ASN][1000 genomes]
rs59171035	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59885161	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs938238	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132957200-132981400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:132968000-132984200	Weak transcription	Psoas Muscle	Psoas
3	chr3:132971400-132977600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:132974200-132975600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:132974600-132974800	Enhancers	Fetal Brain Male	brain

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