Variant report

Variant	rs2670182
Chromosome Location	chr3:133033856-133033857
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133033760..133035440-chr3:133035575..133038496,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1109858	0.83[AMR][1000 genomes]
rs1197282	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1197283	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1197285	0.83[ASN][1000 genomes]
rs1197308	0.82[AMR][1000 genomes]
rs1201674	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1209643	0.83[ASN][1000 genomes]
rs12489235	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12495802	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12630350	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12633430	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12637523	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12639218	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1513366	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16840105	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16840179	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1708355	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1708357	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1708367	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1708368	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1708370	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1795097	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1795101	0.83[AMR][1000 genomes]
rs1992994	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2060639	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4130893	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4854576	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4854582	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4854704	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4854708	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55686499	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55719274	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56269716	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56325413	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59171035	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59885161	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs938238	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014344	chr3:133024614-133042938	Enhancers ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133016400-133038200	Weak transcription	Fetal Lung	lung
2	chr3:133021000-133037600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:133033800-133034400	Enhancers	HUVEC	blood vessel

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