Variant report

Variant	rs1197548
Chromosome Location	chr15:42928764-42928765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10162939	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10400824	0.93[EUR][1000 genomes]
rs1197549	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1197550	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1197551	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12102055	0.82[EUR][1000 genomes]
rs1212814	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12594855	0.81[EUR][1000 genomes]
rs16957020	0.92[EUR][1000 genomes]
rs1705356	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995939	0.83[EUR][1000 genomes]
rs2136900	0.83[EUR][1000 genomes]
rs2280048	0.82[EUR][1000 genomes]
rs2305084	0.80[EUR][1000 genomes]
rs2412740	0.82[EUR][1000 genomes]
rs28479391	0.82[EUR][1000 genomes]
rs28562951	0.84[EUR][1000 genomes]
rs28744617	0.85[EUR][1000 genomes]
rs28798437	0.93[EUR][1000 genomes]
rs28811114	0.92[EUR][1000 genomes]
rs28823029	0.92[EUR][1000 genomes]
rs3099758	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3106285	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3106286	0.89[EUR][1000 genomes]
rs3199486	0.83[EUR][1000 genomes]
rs34070722	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742987	0.80[EUR][1000 genomes]
rs4924690	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4924691	0.93[EUR][1000 genomes]
rs57298545	0.85[ASN][1000 genomes]
rs623271	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493059	0.90[EUR][1000 genomes]
rs672054	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7163030	0.89[EUR][1000 genomes]
rs7169202	0.89[EUR][1000 genomes]
rs7175582	0.83[EUR][1000 genomes]
rs8039765	0.87[ASN][1000 genomes]
rs8043472	0.89[EUR][1000 genomes]
rs9269	0.84[EUR][1000 genomes]
rs938047	0.85[ASN][1000 genomes]
rs9783713	0.83[EUR][1000 genomes]
rs9919994	0.82[EUR][1000 genomes]
rs9920163	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42874800-42929800	Weak transcription	Fetal Brain Female	brain
2	chr15:42897800-42930200	Weak transcription	HSMM	muscle
3	chr15:42898000-42967800	Weak transcription	Fetal Intestine Small	intestine
4	chr15:42898400-42932800	Weak transcription	Esophagus	oesophagus
5	chr15:42898600-42929800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:42900600-42930000	Weak transcription	HMEC	breast
7	chr15:42900800-42929800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:42901400-42929800	Weak transcription	Brain Angular Gyrus	brain
9	chr15:42901600-42930000	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:42901600-42930400	Weak transcription	Primary B cells from cord blood	blood
11	chr15:42903200-42931000	Weak transcription	Fetal Intestine Large	intestine
12	chr15:42904000-42930200	Weak transcription	Right Ventricle	heart
13	chr15:42904200-42929800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:42904600-42930200	Weak transcription	Aorta	Aorta
15	chr15:42908800-43015000	Weak transcription	Fetal Kidney	kidney
16	chr15:42909600-42966400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr15:42910200-42929800	Weak transcription	Fetal Heart	heart
18	chr15:42912200-42929400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr15:42912800-42933200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:42914800-42930200	Weak transcription	Spleen	Spleen
21	chr15:42915200-42940000	Weak transcription	HepG2	liver
22	chr15:42921200-42929600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:42921400-42930200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:42921600-42929400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:42921600-42929800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:42922000-42929400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:42922000-42932200	Weak transcription	K562	blood
28	chr15:42922000-42932800	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr15:42922600-42930000	Weak transcription	NHDF-Ad	bronchial
30	chr15:42923000-42958200	Weak transcription	Hela-S3	cervix
31	chr15:42923800-42929800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:42924200-42931800	Weak transcription	HUVEC	blood vessel
33	chr15:42924400-42930000	Weak transcription	Brain Substantia Nigra	brain
34	chr15:42924400-42944600	Weak transcription	Thymus	Thymus
35	chr15:42924600-42930200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr15:42925000-42930000	Weak transcription	Primary T cells from cord blood	blood
37	chr15:42925000-42934400	Strong transcription	Fetal Muscle Leg	muscle
38	chr15:42925000-42936000	Strong transcription	Fetal Stomach	stomach
39	chr15:42925200-42966000	Weak transcription	NH-A	brain
40	chr15:42925200-42966800	Weak transcription	NHLF	lung
41	chr15:42925400-42933400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr15:42925600-42929600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr15:42925600-42933400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:42925600-42961000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr15:42925800-42929800	Weak transcription	Brain Anterior Caudate	brain
46	chr15:42925800-42930000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr15:42925800-42939200	Weak transcription	GM12878-XiMat	blood
48	chr15:42926400-42929600	Weak transcription	Fetal Lung	lung
49	chr15:42926400-42930000	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr15:42926400-42947200	Weak transcription	Fetal Brain Male	brain

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