Variant report

Variant	rs1197550
Chromosome Location	chr15:42930891-42930892
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42903747..42906321-chr15:42930784..42933299,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10162939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10400824	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10518779	0.90[JPT][hapmap]
rs1058846	0.83[CEU][hapmap]
rs1197548	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1197549	0.99[EUR][1000 genomes]
rs1197551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12102055	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs1212814	0.88[EUR][1000 genomes]
rs12594855	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs12902830	0.84[CEU][hapmap]
rs12905385	0.84[CEU][hapmap];0.85[CHB][hapmap]
rs12906497	0.82[CEU][hapmap]
rs12911585	0.89[CEU][hapmap]
rs12914570	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs16957020	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16957168	0.90[JPT][hapmap]
rs1705356	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs17774047	0.84[CEU][hapmap]
rs1995939	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs2136899	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2136900	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs2175370	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2280048	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs2305084	0.80[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs2305085	1.00[CHB][hapmap]
rs2412740	0.82[EUR][1000 genomes]
rs28479391	0.81[EUR][1000 genomes]
rs28562951	0.85[EUR][1000 genomes]
rs28744617	0.86[EUR][1000 genomes]
rs28798437	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28811114	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28823029	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3099758	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes]
rs3106285	0.90[EUR][1000 genomes]
rs3106286	0.88[EUR][1000 genomes]
rs3199486	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs34070722	0.83[EUR][1000 genomes]
rs34603230	0.80[EUR][1000 genomes]
rs3742993	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs4545789	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs4924690	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4924691	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4924692	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs4924694	1.00[CHB][hapmap]
rs623271	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6493059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6493063	0.80[EUR][1000 genomes]
rs672054	0.90[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7163030	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs7166373	0.90[CEU][hapmap]
rs7167392	0.80[CEU][hapmap];0.81[JPT][hapmap]
rs7169009	0.85[CEU][hapmap]
rs7169202	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs7175582	0.80[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs7182141	0.80[CEU][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes]
rs7182515	0.90[JPT][hapmap]
rs8023524	0.85[CEU][hapmap];0.86[CHB][hapmap]
rs8024902	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs8028785	0.90[JPT][hapmap]
rs8030587	0.83[CEU][hapmap]
rs8031218	0.83[CEU][hapmap]
rs8039711	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs8039765	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs8043472	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9269	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs938047	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs9783713	0.83[EUR][1000 genomes]
rs9919994	0.85[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs9920163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42898000-42967800	Weak transcription	Fetal Intestine Small	intestine
2	chr15:42898400-42932800	Weak transcription	Esophagus	oesophagus
3	chr15:42903200-42931000	Weak transcription	Fetal Intestine Large	intestine
4	chr15:42908800-43015000	Weak transcription	Fetal Kidney	kidney
5	chr15:42909600-42966400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:42912800-42933200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:42915200-42940000	Weak transcription	HepG2	liver
8	chr15:42922000-42932200	Weak transcription	K562	blood
9	chr15:42922000-42932800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr15:42923000-42958200	Weak transcription	Hela-S3	cervix
11	chr15:42924200-42931800	Weak transcription	HUVEC	blood vessel
12	chr15:42924400-42944600	Weak transcription	Thymus	Thymus
13	chr15:42925000-42934400	Strong transcription	Fetal Muscle Leg	muscle
14	chr15:42925000-42936000	Strong transcription	Fetal Stomach	stomach
15	chr15:42925200-42966000	Weak transcription	NH-A	brain
16	chr15:42925200-42966800	Weak transcription	NHLF	lung
17	chr15:42925400-42933400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr15:42925600-42933400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:42925600-42961000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr15:42925800-42939200	Weak transcription	GM12878-XiMat	blood
21	chr15:42926400-42947200	Weak transcription	Fetal Brain Male	brain
22	chr15:42926600-42931000	Weak transcription	HSMMtube	muscle
23	chr15:42926800-42933400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:42926800-42939400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr15:42927600-42931600	Strong transcription	Left Ventricle	heart
26	chr15:42927800-42932000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr15:42927800-42932000	Strong transcription	Adipose Nuclei	Adipose
28	chr15:42927800-42932200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:42927800-42932400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr15:42927800-42932600	Strong transcription	Colon Smooth Muscle	Colon
31	chr15:42927800-42932600	Strong transcription	Ovary	ovary
32	chr15:42927800-42933400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:42927800-42934200	Strong transcription	Fetal Muscle Trunk	muscle
34	chr15:42928000-42935000	Strong transcription	Stomach Smooth Muscle	stomach
35	chr15:42928200-42973600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr15:42928200-42974000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr15:42928600-42934800	Weak transcription	Duodenum Mucosa	Duodenum
38	chr15:42928600-42938600	Weak transcription	Small Intestine	intestine
39	chr15:42928800-42932200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr15:42928800-42933200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:42929000-42931400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr15:42929400-42931800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr15:42929400-42931800	Strong transcription	Lung	lung
44	chr15:42929400-42932400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr15:42929400-42932600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr15:42929400-42932800	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr15:42929600-42931200	Strong transcription	Placenta	Placenta
48	chr15:42929600-42931400	Strong transcription	Brain Cingulate Gyrus	brain
49	chr15:42929600-42931600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:42929600-42931800	Strong transcription	Fetal Lung	lung

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