Variant report

Variant	rs9783713
Chromosome Location	chr15:43040387-43040388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:43038879..43041116-chr15:43044184..43047374,3	K562	blood:
2	chr15:43033816..43036237-chr15:43039881..43041470,2	K562	blood:
3	chr15:43033733..43038217-chr15:43039920..43044631,5	K562	blood:
4	chr15:43038489..43040634-chr15:43041154..43044012,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10162939	0.83[EUR][1000 genomes]
rs10400824	0.88[EUR][1000 genomes]
rs1197548	0.83[EUR][1000 genomes]
rs1197549	0.83[EUR][1000 genomes]
rs1197550	0.83[EUR][1000 genomes]
rs1197551	0.83[EUR][1000 genomes]
rs12102055	0.90[EUR][1000 genomes]
rs12903762	0.82[EUR][1000 genomes]
rs12906497	0.92[EUR][1000 genomes]
rs12912064	0.88[EUR][1000 genomes]
rs12917018	0.92[EUR][1000 genomes]
rs13329197	0.90[ASN][1000 genomes]
rs16957020	0.89[EUR][1000 genomes]
rs16957091	0.89[EUR][1000 genomes]
rs16957104	0.89[EUR][1000 genomes]
rs16957168	1.00[ASN][1000 genomes]
rs1705356	0.82[EUR][1000 genomes]
rs1915241	0.91[EUR][1000 genomes]
rs1995939	0.94[EUR][1000 genomes]
rs2136899	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2136900	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2280048	0.92[EUR][1000 genomes]
rs2305084	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2412740	0.92[EUR][1000 genomes]
rs28498538	0.85[ASN][1000 genomes]
rs28549876	0.92[EUR][1000 genomes]
rs28562951	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28620320	1.00[ASN][1000 genomes]
rs28744617	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28798437	0.88[EUR][1000 genomes]
rs28811114	0.88[EUR][1000 genomes]
rs28823029	0.88[EUR][1000 genomes]
rs3099758	0.83[EUR][1000 genomes]
rs3199486	0.94[EUR][1000 genomes]
rs3742987	0.91[EUR][1000 genomes]
rs3742993	0.85[ASN][1000 genomes]
rs4265781	0.92[EUR][1000 genomes]
rs4924690	0.83[EUR][1000 genomes]
rs4924691	0.88[EUR][1000 genomes]
rs4924694	0.83[EUR][1000 genomes]
rs58938096	0.82[EUR][1000 genomes]
rs623271	0.83[EUR][1000 genomes]
rs6493059	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6493063	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6493066	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67391479	0.86[EUR][1000 genomes]
rs7163030	0.85[EUR][1000 genomes]
rs7166632	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7166775	0.89[EUR][1000 genomes]
rs7167392	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7169009	0.92[EUR][1000 genomes]
rs7169202	0.84[EUR][1000 genomes]
rs7175582	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7176860	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7182141	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7183487	0.82[EUR][1000 genomes]
rs8026233	0.92[EUR][1000 genomes]
rs8027427	0.92[EUR][1000 genomes]
rs8034664	0.91[EUR][1000 genomes]
rs8043472	0.83[EUR][1000 genomes]
rs9269	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9919994	0.95[EUR][1000 genomes]
rs9920163	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv457122	chr15:42948862-43062548	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv569238	chr15:42948862-43062548	Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv977054	chr15:43015821-43171355	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43029400-43051200	Weak transcription	Spleen	Spleen
2	chr15:43029600-43045000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:43029800-43041400	Weak transcription	Psoas Muscle	Psoas
4	chr15:43029800-43043200	Weak transcription	Left Ventricle	heart
5	chr15:43029800-43043800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:43029800-43044000	Weak transcription	Right Ventricle	heart
7	chr15:43029800-43044200	Weak transcription	Fetal Brain Male	brain
8	chr15:43029800-43047600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:43029800-43047800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:43029800-43050800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:43029800-43051200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:43029800-43051200	Weak transcription	Esophagus	oesophagus
13	chr15:43029800-43051200	Weak transcription	Gastric	stomach
14	chr15:43029800-43051400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:43029800-43071000	Weak transcription	Pancreas	Pancrea
16	chr15:43030000-43041600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:43030000-43042000	Weak transcription	Fetal Intestine Small	intestine
18	chr15:43030000-43042800	Weak transcription	Fetal Brain Female	brain
19	chr15:43030000-43043000	Weak transcription	Stomach Mucosa	stomach
20	chr15:43030000-43043200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr15:43030000-43043400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr15:43030000-43043400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr15:43030000-43043600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:43030000-43043600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:43030000-43043600	Weak transcription	Aorta	Aorta
26	chr15:43030000-43043600	Weak transcription	Brain Germinal Matrix	brain
27	chr15:43030000-43043800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:43030000-43043800	Weak transcription	Thymus	Thymus
29	chr15:43030000-43044000	Weak transcription	NHEK	skin
30	chr15:43030000-43044200	Weak transcription	HSMM	muscle
31	chr15:43030000-43044200	Weak transcription	Osteobl	bone
32	chr15:43030000-43044400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr15:43030000-43044400	Weak transcription	Colon Smooth Muscle	Colon
34	chr15:43030000-43045400	Weak transcription	NHLF	lung
35	chr15:43030000-43047800	Weak transcription	HMEC	breast
36	chr15:43030000-43051000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr15:43030000-43051400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr15:43030000-43051600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr15:43030000-43053200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr15:43030000-43053200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr15:43030000-43053800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr15:43030000-43066200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr15:43030000-43067200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr15:43030000-43093600	Weak transcription	Colonic Mucosa	Colon
45	chr15:43030200-43041600	Weak transcription	Fetal Muscle Trunk	muscle
46	chr15:43030200-43042000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr15:43030200-43042800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr15:43030200-43043800	Weak transcription	Fetal Intestine Large	intestine
49	chr15:43030200-43043800	Weak transcription	Fetal Kidney	kidney
50	chr15:43030200-43044000	Weak transcription	HepG2	liver

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