Variant report

Variant	rs11978042
Chromosome Location	chr7:3882332-3882333
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10233941	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10255332	1.00[EUR][1000 genomes]
rs10257812	1.00[CEU][hapmap]
rs10258005	1.00[EUR][1000 genomes]
rs10260208	1.00[CEU][hapmap]
rs10264350	1.00[EUR][1000 genomes]
rs10277000	1.00[CEU][hapmap]
rs12113851	1.00[CEU][hapmap]
rs13437648	1.00[CEU][hapmap]
rs16870975	1.00[CEU][hapmap]
rs17133790	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17133792	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17133795	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17133803	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17133808	1.00[CEU][hapmap]
rs17133812	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17134013	1.00[CEU][hapmap]
rs194370	1.00[CEU][hapmap]
rs2014637	1.00[CEU][hapmap]
rs28650199	1.00[EUR][1000 genomes]
rs34775958	1.00[EUR][1000 genomes]
rs41881	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs41882	1.00[CEU][hapmap]
rs41883	1.00[CEU][hapmap]
rs41884	1.00[EUR][1000 genomes]
rs41886	1.00[EUR][1000 genomes]
rs41888	1.00[CEU][hapmap]
rs41889	1.00[EUR][1000 genomes]
rs41891	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs41892	1.00[EUR][1000 genomes]
rs41894	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs41895	1.00[CEU][hapmap]
rs41896	1.00[CEU][hapmap]
rs41898	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs58125618	1.00[EUR][1000 genomes]
rs59546293	1.00[EUR][1000 genomes]
rs61735677	1.00[EUR][1000 genomes]
rs6462288	1.00[CEU][hapmap]
rs6949215	1.00[CEU][hapmap]
rs6951452	1.00[CEU][hapmap]
rs6967027	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6970269	1.00[CEU][hapmap]
rs6975953	1.00[CEU][hapmap]
rs73304253	1.00[EUR][1000 genomes]
rs73306103	1.00[EUR][1000 genomes]
rs73306106	1.00[EUR][1000 genomes]
rs73306109	1.00[EUR][1000 genomes]
rs73306117	1.00[EUR][1000 genomes]
rs73306119	1.00[EUR][1000 genomes]
rs73306123	1.00[EUR][1000 genomes]
rs73306126	1.00[EUR][1000 genomes]
rs73306128	1.00[EUR][1000 genomes]
rs7791672	1.00[EUR][1000 genomes]
rs7793480	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1021443	chr7:3705273-3889334	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1027624	chr7:3808366-3923408	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv538684	chr7:3808366-3923408	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1029406	chr7:3860894-4477095	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv538685	chr7:3860894-4477095	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1026410	chr7:3869104-4383606	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv887336	chr7:3870810-3934909	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3861000-3886400	Weak transcription	Pancreas	Pancrea
2	chr7:3874200-3887800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:3880800-3888600	Weak transcription	Spleen	Spleen
4	chr7:3882000-3882800	Enhancers	Fetal Muscle Trunk	muscle
5	chr7:3882200-3882400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr7:3882200-3882800	Enhancers	Adipose Nuclei	Adipose
7	chr7:3882200-3886400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:3882200-3894400	Weak transcription	Aorta	Aorta

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