Variant report

Variant	rs13437648
Chromosome Location	chr7:3953227-3953228
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3947932..3950368-chr7:3952794..3955461,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10233941	1.00[CEU][hapmap]
rs10255332	1.00[ASN][1000 genomes]
rs10255603	1.00[CHB][hapmap]
rs10257812	1.00[CEU][hapmap]
rs10260208	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10270839	1.00[CHB][hapmap]
rs10277000	1.00[CEU][hapmap]
rs11978042	1.00[CEU][hapmap]
rs12113851	1.00[CEU][hapmap]
rs12154868	1.00[CHB][hapmap]
rs16870975	1.00[CEU][hapmap]
rs17133790	1.00[CEU][hapmap]
rs17133792	1.00[CEU][hapmap]
rs17133795	1.00[CEU][hapmap]
rs17133803	1.00[CEU][hapmap]
rs17133808	1.00[CEU][hapmap]
rs17133812	1.00[CEU][hapmap]
rs17134013	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17134136	1.00[CHB][hapmap]
rs17134146	1.00[CHB][hapmap]
rs17134285	1.00[CHB][hapmap]
rs194370	1.00[CEU][hapmap]
rs2014637	1.00[CEU][hapmap]
rs34775958	1.00[ASN][1000 genomes]
rs41874	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs41879	1.00[ASN][1000 genomes]
rs41881	1.00[CEU][hapmap]
rs41882	1.00[CEU][hapmap]
rs41883	1.00[CEU][hapmap]
rs41888	1.00[CEU][hapmap]
rs41891	1.00[CEU][hapmap]
rs41894	1.00[CEU][hapmap]
rs41895	1.00[CEU][hapmap]
rs41896	1.00[CEU][hapmap]
rs41898	1.00[CEU][hapmap]
rs61735677	1.00[ASN][1000 genomes]
rs6462288	1.00[CEU][hapmap]
rs6949215	1.00[CEU][hapmap]
rs6951452	1.00[CEU][hapmap]
rs6967027	1.00[CEU][hapmap]
rs6967503	1.00[CHB][hapmap]
rs6970269	1.00[CEU][hapmap]
rs6975953	1.00[CEU][hapmap]
rs730771	1.00[CHB][hapmap]
rs73674356	1.00[ASN][1000 genomes]
rs7780469	1.00[CHB][hapmap]
rs7804545	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1029406	chr7:3860894-4477095	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv538685	chr7:3860894-4477095	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1026410	chr7:3869104-4383606	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1025497	chr7:3905444-4176032	Enhancers Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv538686	chr7:3905444-4176032	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv433014	chr7:3910039-4054769	Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv518377	chr7:3939055-3978342	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1030082	chr7:3941203-3986403	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1020222	chr7:3946655-3985756	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1027500	chr7:3949954-3986403	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3901200-3959600	Weak transcription	Pancreas	Pancrea
2	chr7:3936800-3974200	Weak transcription	Aorta	Aorta
3	chr7:3940600-3953800	Weak transcription	Fetal Brain Male	brain
4	chr7:3948200-3955000	Weak transcription	Spleen	Spleen
5	chr7:3950200-3953600	Weak transcription	Fetal Brain Female	brain
6	chr7:3950600-3955600	Weak transcription	Brain Angular Gyrus	brain
7	chr7:3950600-3955800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:3951000-3955400	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:3951000-3955600	Weak transcription	Brain Substantia Nigra	brain
10	chr7:3951000-3955800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:3951200-3954600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:3951400-3953600	Enhancers	Fetal Lung	lung
13	chr7:3951600-3954000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr7:3952200-3957800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:3952200-3959400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:3952200-3960600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:3952400-3955200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:3952400-3955400	Weak transcription	NHEK	skin
19	chr7:3952400-3955600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:3952400-3955600	Weak transcription	NH-A	brain
21	chr7:3952400-3955800	Weak transcription	Adipose Nuclei	Adipose
22	chr7:3952400-3955800	Weak transcription	Brain Anterior Caudate	brain
23	chr7:3952400-3963200	Weak transcription	Lung	lung
24	chr7:3952600-3953600	Weak transcription	Placenta	Placenta
25	chr7:3952600-3953800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr7:3952600-3956000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr7:3952600-3956200	Weak transcription	Primary B cells from cord blood	blood
28	chr7:3952800-3957000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr7:3952800-3958000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr7:3953000-3955600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr7:3953000-3959000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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