Variant report

Variant	rs10257812
Chromosome Location	chr7:3903353-3903354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10233941	1.00[CEU][hapmap]
rs10251426	0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10260208	1.00[CEU][hapmap]
rs10277000	1.00[CEU][hapmap]
rs10277254	0.83[AFR][1000 genomes]
rs11978042	1.00[CEU][hapmap]
rs12113851	1.00[CEU][hapmap]
rs13437648	1.00[CEU][hapmap]
rs16870975	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs17133790	1.00[CEU][hapmap]
rs17133792	1.00[CEU][hapmap]
rs17133795	1.00[CEU][hapmap]
rs17133803	1.00[CEU][hapmap]
rs17133808	1.00[CEU][hapmap]
rs17133812	1.00[CEU][hapmap]
rs17134013	1.00[CEU][hapmap]
rs194370	1.00[CEU][hapmap]
rs2014637	1.00[CEU][hapmap]
rs28600919	0.92[AMR][1000 genomes]
rs41881	1.00[CEU][hapmap]
rs41882	1.00[CEU][hapmap]
rs41883	1.00[CEU][hapmap]
rs41888	1.00[CEU][hapmap]
rs41891	1.00[CEU][hapmap]
rs41894	1.00[CEU][hapmap]
rs41895	1.00[CEU][hapmap]
rs41896	1.00[CEU][hapmap]
rs41898	1.00[CEU][hapmap]
rs59252575	0.83[AMR][1000 genomes]
rs60121447	0.83[AMR][1000 genomes]
rs60288858	0.83[AMR][1000 genomes]
rs61071172	0.83[AMR][1000 genomes]
rs61245884	0.83[AMR][1000 genomes]
rs6462288	1.00[CEU][hapmap]
rs6949215	1.00[CEU][hapmap]
rs6951452	1.00[CEU][hapmap]
rs6967027	1.00[CEU][hapmap]
rs6970269	1.00[CEU][hapmap]
rs6972129	0.83[AMR][1000 genomes]
rs6972300	0.83[AMR][1000 genomes]
rs6975953	1.00[CEU][hapmap]
rs6976456	0.83[AMR][1000 genomes]
rs7789100	0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7793480	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1027624	chr7:3808366-3923408	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv538684	chr7:3808366-3923408	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1029406	chr7:3860894-4477095	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv538685	chr7:3860894-4477095	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1026410	chr7:3869104-4383606	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv887336	chr7:3870810-3934909	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv887337	chr7:3886254-3934909	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1019190	chr7:3896634-3943566	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3901200-3959600	Weak transcription	Pancreas	Pancrea
2	chr7:3902000-3907000	Weak transcription	Fetal Stomach	stomach
3	chr7:3902200-3907400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:3902400-3905400	Weak transcription	Adipose Nuclei	Adipose
5	chr7:3902600-3903800	Weak transcription	Fetal Lung	lung
6	chr7:3903000-3904200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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