Variant report

Variant	rs60121447
Chromosome Location	chr7:3900622-3900623
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10251426	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10257812	0.83[AMR][1000 genomes]
rs10281665	1.00[EUR][1000 genomes]
rs11982305	1.00[EUR][1000 genomes]
rs16870954	1.00[EUR][1000 genomes]
rs17133908	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55781922	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56269630	1.00[EUR][1000 genomes]
rs57259332	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57670646	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58101419	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58156454	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58436415	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59252575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60288858	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61071172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61245884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6951613	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6955441	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6956672	1.00[EUR][1000 genomes]
rs6959349	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6961081	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6961589	1.00[EUR][1000 genomes]
rs6961925	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6963033	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6971687	1.00[EUR][1000 genomes]
rs6972032	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6972129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6972300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6976456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73310056	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674314	0.83[AMR][1000 genomes]
rs73674331	1.00[EUR][1000 genomes]
rs73674333	1.00[EUR][1000 genomes]
rs73674335	1.00[EUR][1000 genomes]
rs7776637	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7785172	1.00[EUR][1000 genomes]
rs7785202	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7785577	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7788262	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7789100	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7789566	1.00[EUR][1000 genomes]
rs7792440	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7804583	1.00[EUR][1000 genomes]
rs7806075	1.00[EUR][1000 genomes]
rs7806513	1.00[EUR][1000 genomes]
rs985185	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1027624	chr7:3808366-3923408	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv538684	chr7:3808366-3923408	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1029406	chr7:3860894-4477095	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv538685	chr7:3860894-4477095	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1026410	chr7:3869104-4383606	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv887336	chr7:3870810-3934909	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv887337	chr7:3886254-3934909	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1019190	chr7:3896634-3943566	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3894800-3901600	Weak transcription	Aorta	Aorta
2	chr7:3898200-3901000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:3900200-3902600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:3900600-3901000	Enhancers	Right Atrium	heart
5	chr7:3900600-3901200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:3900600-3901200	Enhancers	Lung	lung
7	chr7:3900600-3901600	Enhancers	Fetal Lung	lung
8	chr7:3900600-3902000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:3900600-3902200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:3900600-3902200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr7:3900600-3902400	Enhancers	Colon Smooth Muscle	Colon
12	chr7:3900600-3902800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr7:3900600-3902800	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links