Variant report

Variant	rs6971687
Chromosome Location	chr7:3947731-3947732
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10251426	1.00[EUR][1000 genomes]
rs10281665	1.00[EUR][1000 genomes]
rs11982305	1.00[EUR][1000 genomes]
rs16870954	1.00[EUR][1000 genomes]
rs17133908	1.00[EUR][1000 genomes]
rs55687143	1.00[AMR][1000 genomes]
rs55781922	1.00[EUR][1000 genomes]
rs56269630	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57259332	1.00[EUR][1000 genomes]
rs57670646	1.00[EUR][1000 genomes]
rs58101419	1.00[EUR][1000 genomes]
rs58156454	1.00[EUR][1000 genomes]
rs58436415	1.00[EUR][1000 genomes]
rs59252575	1.00[EUR][1000 genomes]
rs60121447	1.00[EUR][1000 genomes]
rs60288858	1.00[EUR][1000 genomes]
rs61071172	1.00[EUR][1000 genomes]
rs61245884	1.00[EUR][1000 genomes]
rs6951613	1.00[EUR][1000 genomes]
rs6955441	1.00[EUR][1000 genomes]
rs6956672	1.00[EUR][1000 genomes]
rs6959349	1.00[EUR][1000 genomes]
rs6961081	1.00[EUR][1000 genomes]
rs6961589	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6961925	1.00[EUR][1000 genomes]
rs6963033	1.00[EUR][1000 genomes]
rs6972032	1.00[EUR][1000 genomes]
rs6972129	1.00[EUR][1000 genomes]
rs6972300	1.00[EUR][1000 genomes]
rs6976456	1.00[EUR][1000 genomes]
rs73310056	1.00[EUR][1000 genomes]
rs73674331	1.00[EUR][1000 genomes]
rs73674333	1.00[EUR][1000 genomes]
rs73674335	1.00[EUR][1000 genomes]
rs7776637	1.00[EUR][1000 genomes]
rs7785172	1.00[EUR][1000 genomes]
rs7788262	1.00[EUR][1000 genomes]
rs7789100	1.00[EUR][1000 genomes]
rs7789566	1.00[EUR][1000 genomes]
rs7792440	1.00[EUR][1000 genomes]
rs7804583	1.00[EUR][1000 genomes]
rs7805865	0.83[AFR][1000 genomes]
rs7806075	1.00[EUR][1000 genomes]
rs7806513	1.00[EUR][1000 genomes]
rs985185	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1029406	chr7:3860894-4477095	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv538685	chr7:3860894-4477095	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1026410	chr7:3869104-4383606	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1025497	chr7:3905444-4176032	Enhancers Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv538686	chr7:3905444-4176032	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv433014	chr7:3910039-4054769	Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv518377	chr7:3939055-3978342	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1030082	chr7:3941203-3986403	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1020222	chr7:3946655-3985756	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3901200-3959600	Weak transcription	Pancreas	Pancrea
2	chr7:3906800-3949000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:3936800-3974200	Weak transcription	Aorta	Aorta
4	chr7:3940600-3953800	Weak transcription	Fetal Brain Male	brain
5	chr7:3944200-3948000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr7:3946400-3948800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:3947200-3951600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:3947400-3948200	Enhancers	Fetal Lung	lung
9	chr7:3947600-3947800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:3947600-3947800	Enhancers	Brain Substantia Nigra	brain

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